Black, White or Red – Changing Colors

henry finding your roots

The Root recently published the article, “Did My White Ancestor Become Black?”, written by Henry Louis Gates Jr. and Eileen Pironti.  We all know who Henry is from his PBS Series, Finding Your Roots.

America is the great mixing bowl of the world, with Native American, European and African people living in very close proximity for the past 400 years.  Needless to say, on the subject of admixture and race, things are not always what they seem.

Henry Gates sums it up quite well in his article, regardless of what your ancestor looked like, or your family looks like today, “the only way to ascertain the ethnic mixture of your own ancestry is to take an admixture test from Family Tree DNA, 23andMe or Ancestry.com.”

Interestingly enough, in an earlier issue of The Root, Henry talks about how black are Black Americans.

In that article, Henry provides this information.

* According to Ancestry.com, the average African American is 65 percent sub-Saharan African, 29 percent European and 2 percent Native American.

* According to 23andme.com, the average African American is 75 percent sub-Saharan African, 22 percent European and only 0.6 percent Native American.

* According to Family Tree DNA.com, the average African American is 72.95 percent sub-Saharan African, 22.83 percent European and 1.7 percent Native American.

* According to National Geographic’s Genographic Project, the average African American is 80 percent sub-Saharan African, 19 percent European and 1 percent Native American.

The message is, of course, that you never know.  Jack Goins, Hawkins County, Tennessee archivist,  is the perfect example.  Jack is the patriarch of Melungeon research.  His Goins family was Melungeon, from Hawkins County, Tennessee.  Jack founded the Melungeon DNA projects several years ago which resulted in a paper, co-authored by Jack (along with me, Janet Lewis Crain and Penny Ferguson), cited by Henry Louis Gates in his above article along with an associated NPR interview, titled “Melungeons, A Multiethnic Population.”

jack goins melungeon

Jack, shown above with the photo of his Melungeon ancestors, looks white today.  His family claimed both Portuguese and Indian heritage.  His ancestors and family members in the 1840s were prosecuted for voting, given that they were “people of color.”

But Jack’s Y DNA, providing us with his paternal link to his Goins male lineage, is African.  No one was more shocked at this information than Jack.  Jack’s autosomal DNA testing confirms his African heritage, along with lots of European and a smidgen of Native in some tests.

When in doubt, test your DNA and that of selected relatives to document your various lines, creating your own DNA pedigree chart.  For a broad spectrum picture of your DNA and ethnicity across of all of your heritage, autosomal DNA testing is the way to go.  Without all of these tools, neither Jack nor Henry would ever have known their own personal truth.

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Autosomal DNA, Ancient Ancestors, Ethnicity and the Dandelion

 dandelion 1

Understanding our own ancient DNA is a little different than contemporary DNA that we use for genealogy, but it’s a continuum between the two with a very long umbilical cord between them, then, and now.  And just when you think you’re about to understand autosomal DNA transmission and how it works, the subject of ancient DNA comes up.  This is particularly perplexing when all you wanted in the first place was a simple answer to the question, “who am I and who were my ancestors?”  Well, as you’re probably figured out by now, there is no simple answer.

Inheritance

In a nutshell – we know that every generation gets divided by 50% when we’re talking about autosomal DNA transmission.

So you inherit 50% of the DNA of each of your parents.  They inherited 50% of the DNA of each of their parents, so you inherit ABOUT 25% of the DNA of each of your grandparents.

Did you see that word, about?  It’s important, because while you do inherit exactly 50% of the DNA of each parent, you don’t inherit exactly 25% of the DNA of each grandparent.  You can inherit a little less or a little more from either grandparent as your parents 50% that you’re going to receive is in the mixer.

This is also true for the 12.5% of each of your great-grandparents, and the 6.25% of each of your great-great-grandparents, and so forth, on up the line.

The chart below shows the percentages that you share from each generation.

Relationship to You Approximate % Of Their DNA You Share
Parents Exactly 50%
Grandparents 25
Great-grandparents 12.5
Great-great-grandparents 6.25
Great-great-great-grandparents 3.125
Great-great-great-great-grandparents 1.5625

Ethnicity

So, here’s the question posed by people trying to understand their ethnicity.

If I have 3% Melanesian (or Middle Eastern, Indo-Tibetan or fill-in-the-blank ethnicity), doesn’t that mean that one of my great-great-great-grandparents was Melanesian?

There are really two answers to this question.  (I can hear you groaning!!!)

If the amount is 25% (for example) and not very small amounts, then the answer would be yes, that is very likely what this is telling you.  Or maybe it’s telling you that you have two different great-grandparents who have 12.5 each – but those relatives are fairly close in time due to the amount of DNA that came from that region.  See, that was easy.

However, the answer changes when we’re down in the very small percentages, below 5%, often in the 1 and 2% range.  This answer isn’t nearly as straightforward.

The Dandelion – Your Ancestor

The answer is the dandelion.

dandelion 2

The dandelion is one of your ancestors who lived in the Middle East, let’s say, 20,000 years ago, maybe 30,000 years ago.  In case you’re counting generations, that is 800 to 1200 generations ago.  The percentage of DNA you would carry from a single ancestor who lived 20,000 years ago, assuming you only descended from that ancestor 1 time, is infinitesimally small.  There are more zeroes following that decimal point than I have patience to type.  Let’s call that ancestor Xenia and let’s say she is a female.

However, you did inherit DNA from many of your ancestors who lived 20,000 years ago, thousands of them, because all of them, through their descendants, make up the DNA you carry today.  So infinitesimally small or not, you do carry some of the DNA of some of those ancestors.  It’s just broken into extremely small pieces today and their individual contributions to you may be extremely small.  You don’t carry any DNA from some of them, actually, probably most of them, due to the recombination event, dividing their DNA in half, happening 800 times, give or take.

Now, given that your ancestors’ DNA is divided in every generation by approximately half, and we know there are about 3 billion base pairs on all of your chromosomes combined, this means that by generation 32 or 33, on average, you carry 1 segment from this ancestor.  By generation 45, you carry, on average, .00017 segments of this ancestor’s DNA.  And for those math aficionados among us, this is the mathematical notation for how much of our ancestor’s DNA we carry after 800 generations: 4.4991E-232.

But, we also know that this dividing in half, on the average, doesn’t always work exactly that way in reality, because some of those ancestors from 20,000 years ago did in fact pass their DNA to you, despite the infinitesimal odds against that happening.  Some of their DNA was passed intact generation after generation, to you, and you carry it today.  The DNA contributed by any one ancestor from 800 generations ago is probably limited to one or two locations, or bases, but still, it’s there, and it’s the combined DNA of those ancient ancestors that make us who we are today.

The autosomal DNA of any specific ancestor from long ago is probably too small and fragmented to recognize as “theirs” and attribute to them.  Of course, the beauty of Y DNA and mitochondrial is that it is passed in tact for all of those generations.  But for autosomal DNA and genealogy, we need hundreds of thousands of DNA pieces in a row from a particular ancestor to be recognizable as “theirs.”  When we measure DNA for genealogy, what we are measuring is both centiMorgans, a measure of distance between chromosome positions (length) and the number of contiguous SNP (Single Nucleotide Polymorphism) base locations that match (quantity).  The values from these calculations tells us how closely we are related to people, because remember, DNA is divided in each generation so there is a mathematically predictable amount we will share with specific relatives.

Here is an example from a Family Finder comparison table showing both centiMorgans and matching SNPs with a second cousin.

family finder table

The matching threshold for genealogical significance is either 5 or 7 cM depending on which of the major companies you are using.  At Family Tree DNA, if you match above the threshold, then you can view down to 1cM, which is the case above.  Another match criteria is the number of SNPs, or locations, matching contiguously.  Anything below about 500-800 is considered to be a population match, not a genealogical match, unless you also have a significant number of genealogical matches at higher cMs and segments with this person.

OK, where is all of this going?

Dispersion

Think of your ancestor 20,000 years ago as the dandelion.  Now, blow.

dandelion 3

Xenia lived in the Middle East.  Where might her descendants land, over time, with every new generation?  In Europe?  In Asia?  In India?  In America via the Native Americans through Asia?  In North Africa?  Where?

So let’s say that groups of descendants settle across the globe.  Let’s say that her mitochondrial haplogroup is X.  Yes, haplogroup X is found both in Europe and in Asia and in the Native Americans, so this is actually a good example.  So Xenia carried mitochondrial haplogroup X and we know for sure via mitochondrial DNA testing that indeed, Xenia’s seeds were scattered to all of the winds.  The only place we haven’t found Xenia’s children is in Subsaharan Africa and the Australian archipelago, at least not yet.

Ok, so now that we know where her children and their children went, let’s go back to ancient DNA.

Predictive DNA

The way ethnicity is determined is by studying the frequency with which a specific allele or group of alleles is found in any particular population.  Two “pure” examples come to mind.

The first example is the Duffy Null allele that is only found in the Subsaharan African populations.  Currently this marker is found in about 68% of American blacks and in 88-100% of African blacks.  If you have the Duffy Null allele, you have African heritage.  Of course, you don’t know which line or which ancestor it came from, or how far back in time, but it assures you that you do in fact have African heritage.  It could have been from an ancestor long ago.  It could have been very recent.  This is one of the factors considered when determining percentage of ethnicity.

A second example is the STR marker known as D9S919 which is present in about 30% of the Native American people.  The value of 9 at this marker is not known to be present in any other ethnic group, so this mutation occurred after the Native people migrated across Beringia into the Americas, but long enough ago to be present in many descendants.  There is also no other known marker that is only found only among Native Americans, although I expect as we move into full genome sequencing we will discover more.  You can test this marker individually at Family Tree DNA, which is the only lab that offers this test.  If you have the value of 9 at this marker, it confirms Native heritage, but if you don’t carry 9, it does NOT disprove Native heritage.  After all, many Native people don’t carry it.  Again, you don’t know how long ago this marker was introduced into your ancestry.

These two examples are very unique because the markers are found only in certain groups.  Generally, with the rest of the DNA values, they are found in different amounts, or frequencies, in different parts of the world and ethnic groups.

So, if you’re trying to determine the ethnicity of an individual, you’re going to compile a huge data base of percentages of DNA values found of Ancestrally Informative Markers (AIMs) in different parts of the world.

So, you would compare the participant’s values against your data base and you will come up with those regions or ethnicities that are present most often in your comparison.  This is exactly what the products and services that provide you with your ethnicity percentages do – and how accurate the results are depend highly on the data base itself, the amount of data, and the quality of data.  Dare I mention Ancestry’s issue that they’ve had since they first began offering their autosomal product over a year ago where everyone seems to have Scandinavian ancestry?  Ancestry doesn’t share with us their sources, so as a community we have no idea how they have come up with these numbers.

You can easily compare your autosomal results in nauseating detail at both 23andMe and Family Tree DNA by testing with both companies, or by testing with either 23andMe or Ancestry and transferring your autosomal results to Family Tree DNA.  All 3 of these companies will give you a somewhat different result, but they should be in the same ballpark.  You can also then download your raw data file from any of those vendors and upload it to www.gedmatch.com where you can then do ethnicity comparisons using a variety of tools.  These tools, an example shown below, will have much more variance and detail than the vendor’s tools or results.  And because of that, they tend to be more confusing as well.

gedmatch example

Many people with small amounts of minority admixture are disappointed with the results through the vendors, especially if their Native American admixture doesn’t show.  I wrote extensively about this in my series, The Autosomal Me, so I won’t rehash it here, but using the GedMatch tools is very enlightening, as you can see above with my results.  And do I really have Indo-Tibetan and Indo-Iranian ancestors?

Where’s Xenia?

Back to Xenia and her descendants.  Let’s say that Xenia’s descendants settled in four primary locations.  One is in the Middle East – they never left home.  One is in Asia and from there, to the Americans to become the Native Americans and lastly, to Europe.  Now let’s say there is a pocket of them in the Altai region of Asia and a pocket in France.  The Altai is the ancestral home of the Native Americans and could explain the Indo-Tibet result, above.  We’ll call that Central Asia.  And France is where my Acadian ancestors were from.  Hmmm….this is getting confusing.  To make matters even more confusing, I might well descend from both groups, who originally descended from Xenia.

Let’s say that I do in fact carry small segments of Xenia’s DNA.  Now let’s say that this same DNA is found in a group of people in Central Asia, maybe in Tibet, it’s published in an obscure journal someplace, and it finds its way into a data base.  Voila – there you go – I now have a match in Central Asia in a place called Indo-Tibet.  But do I really?

Does this mean that my ancestor was from Central Asia?  Not necessarily.  And if so, maybe not recently, but the people from that location for some reason share some of the DNA that I carry.  The question of course is why, how and when?

What this really means to you is a matter of degrees.  If you have a few matches from obscure regions, along with very small percentages, it is likely a result of the dandelion’s dispersion.  If you have a lot of matches, meaning a high percentage hit rate, from a particular region, pay attention, it probably has some genealogical significance.

It’s no wonder people are confused by this!  Now, just think how many dandelions you have.  In 15 generations, you have 32,768 ancestors.  In fact, this is how we know for sure that we all descend from the same ancestor multiple times.  Our number of ancestors quickly exceeds the world population.  In 30 (25 years) generations, in about the year 1263, we reach about 1 billion ancestors.  In 1750, there were 791 million people on Earth, in 1600, 580 million, in 1500, 458 million and in 1000, 310 million.

Ancestors - Years

We know that we very likely descend several times from a much smaller group of ancestors from isolated local populations.  However, just looking at the 32,000+ ancestors in 15 generations, it’s still an entire dandelion field!!!

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Disclosure

I receive a small contribution when you click on some of the links to vendors in my articles. This does NOT increase the price you pay but helps me to keep the lights on and this informational blog free for everyone. Please click on the links in the articles or to the vendors below if you are purchasing products or DNA testing.

Thank you so much.

DNA Purchases and Free Transfers

Genealogy Services

Genealogy Research

Kitty Cooper’s Chromsome Mapping Tool Released

I haven’t had time to try this yet, but I can hardly wait.  Kitty Cooper’s chromosome mapping tool enables those who have taken one of the autosomal tests from Family Tree DNA or 23andMe and downloaded matches to map the segments that you know are associated with certain ancestral lines on your chromosomes with a color key.

The genetic genealogy community has been anxiously waiting for this tool.  You can find it here:  http://kittymunson.com/dna/ChromosomeMapper.php

Until now, we were relegated to keeping this kind of information on a spreadsheet.  I covered how to do this in my blog on Autosomal Triangulation and also in one of the Autosomal Me segments.

vannoy table 1

But thanks to Kitty, we can take the information above and make it look like the example below from Kitty’s blog.

kitty's chromosome mapping

We can’t think you enough Kitty!!!  Way to go!  Woohoo!

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Disclosure

I receive a small contribution when you click on some of the links to vendors in my articles. This does NOT increase the price you pay but helps me to keep the lights on and this informational blog free for everyone. Please click on the links in the articles or to the vendors below if you are purchasing products or DNA testing.

Thank you so much.

DNA Purchases and Free Transfers

Genealogy Services

Genealogy Research

Combining Tools – Autosomal Plus Y-DNA, mtDNA and the X Chromosome

Sometimes, there’s nothing worse than a little bit of knowledge to get us into trouble.  If you need proof of that, I can show you a picture of one of my first quilts which has thankfully disappeared someplace and was known semi-affectionately as “The Ugly Quilt.”  I even entered it in an “Ugly Quilt” contest and it wasn’t even good enough, or is that bad enough, to win that!!  Fortunately, things have improved!  I’ve learned a lot.

Combine a little knowledge with people who desperately want answers, and you have a situation ripe for mistakes, misinterpretation and misunderstanding.

That’s what sometimes happens when you combine the results of two different genetic genealogy tools and you don’t really understand their differences, their application to the specific problem at hand, or what the results are really telling you.

I’m talking about combining autosomal testing with haplogroup based testing, both Y DNA and mitochondrial DNA.  This comes in two flavors; generic and specific.

Generic Matching – 23andMe

At 23andMe, your match results are displayed in a list along with information which may or may not be relevant to you and your match.  Shown below are my 8 top matches at 23andMe.  I know who these people are – they are my relatives, so there is no question of interpretation here.  Let’s take a look at the information provided.

combining 23andme

I have omitted the name column which is first.  The second column is their relationship to me.  The top row is me.  Everyone has the option to enter geographic (blue tab) and surname information (green tabs,) which I have done.  Not everyone does that as you can see by the information shown for the others.

Note the different haplogroups here.   For mitochondrial (pink tab), you have 7 different haplogroups out of 8.  That’s because these people, other than my son and I, don’t share a common maternal line.  If they did share a haplogroup, it would be coincidence, or very far back in time, because we know the pedigree charts of all of these people and they do not share a known maternal ancestor.

Looking at the Y DNA haplogroups, you’ll notice that there are 4 men and of those 4, three share the same haplogroup.  That is because, in this case, they are cousins who also share the same surname.  If I was an adoptee and made this discovery, I’d be in 7th Heaven, because this would be a very large hint.  However, if these men shared a haplogroup but didn’t share a common surname, again, it could be coincidence or a common ancestor very far back in time.

I put those words in bold because recently I’ve seen the tendency to jump to conclusions about the relevance of common haplogroup information related to autosomal testing.

Let’s use an example. At 23andMe, you are provided with what is considered an extended haplogroup.  Most of the time, these are correct except when the haplogroup designation involves insertions and deletions or reversions which can’t be detected reliably by this type of testing, only by full sequence or SNP testing.  Let’s not go there and let’s presume these are absolutely accurate for purposes of this illustration.  I happen to know my haplogroup listed at 23andMe is out of date.  It is listed as J1c2 and it is actually J1c2f, but that actually enhances the point I’m about to make.

Using the Behar paper supplement to “A Copernican Reassessment of the Human Mitochondrial Tree From its Root,”  the common ancestor for haplogroup J1c2 lived approximately 9700 years ago (plus or minus 2010 years standard deviation).  Therefore, my common ancestor with anyone sharing this haplogroup is anyplace from the current generation (my children or parents) to nearly 10,000 years ago – clearly not relevant for genealogy.  However, looking at my extended haplogroup, not determined by 23andMe, but found in my Family Tree DNA full sequence information, the common ancestor of J1c2f lived about 1900 years ago (plus or minus 3100 years standard deviation).  Clearly that makes about an 8000 year difference, which narrows the window, but it still isn’t necessarily genealogically relevant.

Furthermore, at 23andMe, haplogroup information is provided, but personal mutations are not, for either Y DNA or mitochondrial.  This is why I referred to this type of match at “generic.”  For specific Y DNA or mitochondrial matching, you’ll need to go to Family Tree DNA.

Specific Matching – Family Tree DNA

At Family Tree DNAY DNA, mitochondrial DNA and autosomal results require different tests.  The results are shown on different tabs on your personal page.

combining ftdna

Each tab provides you with a significant number of pages of information about each test and displays your results in different ways.

For both Y DNA and mitochondrial (mtDNA), one of the options is “Matches” which shows you your personal matches at several levels.  For mtDNA, the levels are HVR1, HVR1+HVR2 and Coding Region, which equate to the three levels of tests that you can take – basically introductory, intermediate and advanced.  For Y DNA, the levels are 12, 25, 37, 67 and 111 markers.

My match results are shown below, again, with the first column, names, removed.

combining mt matches

SmartMatching is important here, because Family Tree DNA has already done you the favor of removing anyone who is not a “true match.”  Notice that the first column shown here includes the envelope icon, a notes icon, a pedigree chart icon, and following that, the level of testing taken by this person.  I’m showing my full sequence matches here, so everyone has taken the FMS or full mitochondrial sequence test.

These are the people who also share the extended haplogroup of J1c2f.  This means our common ancestor lived sometime between now and about 2000 years ago (plus or minus the standard deviation.)  When you look at the oldest ancestors and the matches map that goes along with this test at Family Tree DNA, you can see how widely spread these “most distant” ancestors are.  You can also see that one person has listed their grandfather, which means they were confused.  A most distant mitochondrial, maternal, ancestor cannot be a grandfather – so this also calls into question the accuracy of their geographic information as well, shown in the Czech Republic, below.

Combining map

Two thousand years ago (give or take) the common ancestor of all of these people was one person, and their direct descendants, their children, all lived in the same place initially.  You can travel a long way in 2000 years.  My oldest ancestor, the white balloon is found in German and my closest match is found in Norway.

To understand how to use combined tools, you have to understand each individual tool first.

Family Tree DNA does provide a combined matching tool called “Advanced Matching” for Y DNA, mtDNA and autosomal (Family Finder) tests.

Advanced Matching

Advanced matching allows you to combine test types and filter on specific fields.

combining advanced options

The most common advanced matching for autosomal DNA is the combination of the Family Finder test plus either mtDNA or Y DNA results.

As they say, “your mileage may vary” and much of this variance will depend on two things.  First, how many people tested at which testing level of the mtDNA and Y DNA tests and second, the relative rareness of your haplogroup.  Said another way, if your mtDNA haplogroup is H and/or if your Y DNA haplogroup is R, you’re very likely to have a lot, many, low level matches because those haplogroups make up about half of the European population, respectively.  However, if your haplogroup is J1c2f, meaning that your base haplogroup is much less common than H and that you’ve taken the full sequence test, you’re going to get a lot fewer and a lot more meaningful matches.

At the haplogroup H level, which is the most common HVR1 results, your common ancestor lived between 12,000 and 30,000 years ago, depending on whose estimates you use.  Compare that to J1c2f’s 1900 years.  Big difference.  But is it big enough?  It’s a clue, just like any other clue.

What Matches Don’t Mean

Let’s say that on the advanced menu you selected two tests, the Family Finder and the FMS (full mitochondrial sequence) test.  The result is no matches.  IF you had a match at this level, it does NOT mean that your common autosomal match is on the maternal, mitochondrial line.  This is a very common mistake in logic.  It means that you should continue to include this line in your search and maybe you want to focus there.

Let’s look at why.  Autosomal testing reaches back in time to recent ancestors and measures how much of their DNA you share.  In the past 5 or 6 generations, you likely share some DNA from all of your ancestors.  After that, some of your ancestors DNA gets so diluted that it becomes in effect, washed out, or is present in such small quantities that we can’t effectively attribute it’s source.  Mitochondrial DNA however, is never admixed or divided.  Therefore time in terms of recent generations, unless we’re talking about when mutations occurred, like the mutation that set apart haplogroup J1c2f some 2000 years ago, is irrelevant.  Mitochondrial and Y DNA both measure back in time to your earliest ancestor in that line.

The best use of both mtDNA and Y DNA with autosomal is to eliminate possible lines.

What Matches Do Mean

Let’s say I select Family Finder and the HVR1 level and show only people I match in both tests.

At this point, especially if you are haplogroup H, you’re going to get a long list of matches and people get very excited at this point. Don’t.

combining mt no match

Above is an example list.  Here’s also the problem.

Problem 1 – Most people only tested at the HVR1 level.  For haplogroup J, this means the common ancestor lived about 35,000 years ago, plus or minus 5,000.  What this really means is that if these people were to take the full sequence test, chances are they would no longer match you.  There are more than 100 subgroups of haplogroup J and chances are very good that the tester would fall into one of them.

Problem 2 – Some people have tested at the HVR2 level or the FMS level and don’t match you at that level, even though they matched you at the HVR1 level.  Look at the first result, the second column, the X.  This means they did test and they don’t match you.  This means that you’ve just eliminated this direct maternal line as a possible autosomal match, barring a mutation in the past few generations which is not impossible but extremely unlikely.

However, when people are desperate for any shred of evidence, they interpret this as “I match on the HVR1 level so this must be my common line with this person.”  That is flawed logic and is outright wrong in the situation where the person has tested at a higher level and does NOT match.  In fact, it’s just the opposite, you’ve just disproven this line.  Now I think this is a good thing, because that means you can focus elsewhere.

This same logic holds for Y DNA matching as well.  Finding someone you match with at the 12 marker level in haplogroup R, especially R1b1a2 (M269) is quite common.  Finding someone you match at 67 or 111 markers and autosomally might be quite another matter.

A Third, Neglected Tool

There is a third tool that can be added to the mix here, but it’s not nearly as convenient as Advanced Matching.

Both 23andMe and Family Tree DNA test your X chromosome when they do their autosomal testing.

The X chromosome has a unique inheritance path which is different for men and women.  If you recall, women inherit an X from both Mom and Dad, but males only inherit an X from Mom.  They get the Y from Dad which makes them male.  If you match someone on the X chromosome, or you don’t, that too is powerful information.

Blaine Bettinger originally published some wonderful X inheritance charts on his blog, The Genetic Genealogist, in December 2008 and January 2009 documenting how to use the X chromosome for genealogy.

The chart below shows the male inheritance path for the X chromosome via the colored locations.  Because males and females both inherit the X from their mother, the maternal inheritance path of the X chromosome, the right half of this chart, is the same for men and women.  In this case, we’re particularly interested in the mitochondrial DNA path as well, which is the furthest right pink line on the chart, shown with the arrows along the edge.

combined x match

Including the X chromosome matching, here are your three possible outcomes.

  • If you match autosomally, you match at the deepest (full sequence) haplogroup level and you match on the X chromosome, you may indeed have a solid lead in the direct maternal line.  It’s a lead, nothing more.  It’s not confirmation of a common autosomal ancestor in that line.
  • If you match autosomally, you do not match at the haplogroup level, but you do match on the X chromosome, then you know it’s NOT the direct maternal line but it IS one of the other lines where you share an X chromosome.
  • If you match autosomally and you do not match at either the haplogroup level or on the X chromosome, you know that you can eliminate the direct maternal line and your match is probably on a line where you don’t share the X.  I say probably because like any other DNA that is shared in an autosomal fashion, meaning divided by approximately 50% in every generation, it’s possible after several generations to not show as a match on the X but to still be descended from those lines.

Jim Turner created some nice X chromosome inheritance pedigree charts that are easily printable which you can find here.

Take Away

What’s the take-away in all of this?  These are very powerful tools, but they only tools and they provide clues.  Some clues eliminate possible connections, some clues suggest them.  It’s only through multiple tools like triangulation and old-fashioned genealogy research that we confirm them.

We’ve gotten spoiled with the relatively easy Y DNA answers.  A man tests and if he matches other men with the same surname with few mutations, we call it family and all is good.  Women don’t have that luxury and neither do adoptees, although male adoptees clearly have the advantage of a potential solid Y match.  Other types of DNA testing and analysis just aren’t as straightforward or easy, but that doesn’t mean the answer isn’t there.  Perseverance is key.  Common sense, understanding the tools and removing emotion, as much as possible, from the equation are critical.  If you’re in doubt, get help.  It’s a lot better to pay for an hour or two of consulting than to make a critical error in logic that can introduce errors into your family tree or cause you to waste time chasing the wrong lines.

Unraveling the secrets your DNA has to tell you is much like that game of Clue that we played as kids – accumulating pieces of information that, cumulatively, hopefully, lead to an answer.  Miss Scarlet did it in the ballroom with Professor Plum.  Or was it Colonel Mustard, or Reverend Green?

combined clue

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Disclosure

I receive a small contribution when you click on some of the links to vendors in my articles. This does NOT increase the price you pay but helps me to keep the lights on and this informational blog free for everyone. Please click on the links in the articles or to the vendors below if you are purchasing products or DNA testing.

Thank you so much.

DNA Purchases and Free Transfers

Genealogy Services

Genealogy Research

Happy First Blogiversary

may you live in interesting times

Today is the first anniversary of the launch of www.dna-explained.com.  In a way it seems like just yesterday and in another way, it seems like DNA-explained has been a part of my life forever.  One thing is for sure, it’s been a very interesting year!

So now, I’m going to tell you a secret.

I was going to retire early and write a book.  I was going to have time on my hands.  I was going to work on my own genealogy and share the journey of what I learned.  I was going to weed my garden.  Are you laughing now?  Holding your sides?  Well, if so, you clearly understand just how unrealistic that expectation was.

I have less, much less, time now than ever.  My little part-time retirement job overtook my original career, and then some.  I’ve never worked harder, had less sleep, nor loved it more.  Is sleep really a necessity?  Seems like so much wasted time.  Spoken like a true genealogist!

Genetic genealogy is the marriage of my two passions, genealogy and science.  I spent my entire career on the very exciting edge of technology, first communications research and discovery, then mapping and specialized software.  Genetic genealogy isn’t much different actually, except it’s more bleeding edge (some days) than leading edge and it’s much more personal and fulfilling.  Not only have I learned volumes about my own ancestors – things there was no prayer of knowing even a decade ago – but I get to help others on that journey too.  Not only that, but I’ve gotten to be personally involved in scientific discovery.  I can’t imagine a better place to be!

And no, I’m not writing a DNA book.  Well, actually, I am, soft of – but just in a different way.  Blogs are the way of the future – so is electronic communication.  The problem with books about fast-moving and highly technical topics is that they move on and change so rapidly that tomorrow, literally, your book can be out of date and you have no way to update it.  Just what I don’t need is another box of boat-anchors in my office.

Not long ago, someone on the ISOGG Facebook page asked for a list of books and someone replied, “forget the books, read the blogs.”  I don’t want to invest the effort into one of those “forgotten books” when the blogosphere beckons and is so much more friendly towards photos, graphics, color and change.  It’s also a lot more personal and flexible.  And it lets me interact with you and vice versa .

So how have we done this first year?  As of yesterday, we surpassed 2100 subscribers and that doesn’t count all of the RSS feed, Facebook and Twitter followers.  My husband bet me I’d have 2000 by summer and I said I wouldn’t.  Good thing I didn’t bet much, because I was wrong.  Thanks to all of you.  Sometimes being wrong is a good thing!

This is the 162nd posting, so about one every other day.  I had goaled one a week.

There have been a total of about 2700 “real” comments and are you ready for this, almost 29,000 spam ones.  No, that is not a typo.  Yes, I do use a spam filter, but I still approve every single comment that is posted – and now you know why.  The spam filter doesn’t catch them all, because spammers are crafty!

In total, the articles are “tagged” in 81 different categories so you can find them by searching.  One of the articles I’ll be writing soon will tell you how to use and search blogs more efficiently, including this one!

http://www.dna-explained.com has had a total of 249,545 views, nearly a quarter million and that doesn’t count the 2100+ people who receive postings via e-mail and RSS.  We average just over 1000 hits per day now.  Wow!

What is the most popular category of blog articles visited?  Autosomal DNA.

How about the most popular article?  Big News! Probable New Native American Haplogroup.  That shocked me.  For a long time, the most popular article had been the kickoff of the Geno 2.0 announcement, National Geographic – Geno 2.0 Announcement – The Human Story published on July 25, 2012.  Older articles have more time to amass hits – and the haplogroup article was just published June 27th.  Indeed it does seem to be big news and is of interest to lots of people.

One of my reasons for creating this blog was as a matter of self-defense.  I receive a lot of inquiries through my various list memberships.

So I decided that if I wrote the answers to the most frequently asked questions, well, including graphics and pictures (which really are worth 1000 words), once, I could use that document to answer people’s questions, over and over again.  The good news is, so can you.  What are the most commonly asked questions and the pages I use to answer them?

  1. What can DNA testing do for me?  That is such a basic question and the answer could be that book I didn’t write.  I use the article 4 Kinds of DNA for Genetic Genealogy to answer this one.
  2. I think my ancestor was Native American and I want to prove it.  This question also has other variants like, proving which tribe, joining a tribe, getting benefits and free education.  I refer people to the article Proving Native American Ancestry Using DNA.
  3. I’m adopted, or I don’t know who my father is, and I want to use DNA testing to find my parents/ancestry.  This is also relevant for people who discover an undocumented adoption in their line that “interferes” with the genealogy they thought they knew.  For this answer, I use I’m Adopted and I Don’t Know Where to Start.  This article, along with many others, links within the article to other resources as well.
  4. What can autosomal testing do for me?  If I had a dollar for every time I’ve received some flavor of this question, I’d be really retired and on that World Cruise!  The article I use for this is Autosomal Basics.
  5. And then the companion question to the one above, my autosomal results are back – what do I do with them now?  For this one, I refer people to the summary article for The Autosomal Me series.  While it is focused on a particular challenge for me, minority Native admixture, the tools and techniques are relevant for everyone.

We’ve had an awesome first year, thanks to all of you, and I’m looking forward to even more breakthroughs and findings in year two.  I love sharing your stories and victories too and always appreciate tips and hints pointing out genetic genealogy items of interest.  I have some fun articles planned for this upcoming year and there are discoveries on the horizon, so stay tuned!!!

And indeed, may we all continue to live in very interesting times!

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Disclosure

I receive a small contribution when you click on some of the links to vendors in my articles. This does NOT increase the price you pay but helps me to keep the lights on and this informational blog free for everyone. Please click on the links in the articles or to the vendors below if you are purchasing products or DNA testing.

Thank you so much.

DNA Purchases and Free Transfers

Genealogy Services

Genealogy Research

                       

Pérez, Peres, Paries, Perica, Perry and Paris on PBS, Oh My

perez signatureYou know, it’s amazing the things you learn filming a PBS documentary.

You learn that no matter what you do, light is going to reflect off of your glasses.

You learn that you can indeed hear an unhappy cat who has been banished to the 3 seasons room through two closed doors.  That same unhappy cat begs to go out there any other time.

You learn that while you are filming, the phone, will, unfailingly ring every time, even if it hasn’t rung in 3 days.

You learn that if you take your phone off the hook, AT&T, now a smarter phone company, figures this out, assumes you made a mistake, and lets the phone ring again anyway.  Sigh….

You learn that if you get one of those annoying recorded sales calls, if you just lay the phone down (or bury it under a pillow), it will play forever and effectively takes the phone “off the hook.”  YES!!!

You learn that if you are a young man in the late 1800s from Guam, you sign on to a whaling ship, and the guys can’t pronounce your name, Dimitrio, they call you John.  Eventually you begin to call yourself John too.  It’s contagious apparently.  You do, however, give two of your children Dimitrio as a middle name, just to torment your descendants with hidden clues.

And you learn that the surname Perez which is pronounced in the US like the word pear with the beginning of the word Ezmerelda is pronounced like the city in France, Paris, in Guam.

You also learn that a man named Juan Perez, also known as Dimitrio Perez can mix his multiple first names and about 6 different ways of spelling Perez in an indefinite number of ways.  His signature as John Paris is shown above.

Indeed, maybe this is a clue to our mystery.

A mystery?  What mystery?  I love a good mystery!!!

The Mystery

Well, Jillette Leon-Guerrero has a fine mystery on her hands with all of the requisite red herrings and twists of fate included.  And she’s making a PBS documentary of her process of finding the answer.  Check out her website, Across the Water in Time.

It’s hard enough to track people whose surnames are misspelled, but to change countries, change pronunciations, change surnames, change first names….and to still be able to be identified…well, now we’ve entered the realm of DNA sprinkled with a little fairy dust for good luck.

So, here is the fundamental question.  Is Juan Perez, aka Dimitrio Perez aka John Paris, who was born in 1843 and died in 1928 in Hawaii related to the Perez family on Guam?

The descendants of John Paris on Hawaii carry an oral history that he was from Guam, then a Spanish colonial colony.  Jillette, from Guam herself, discovers later that they also had an oral tradition that he changed his name from Dimitrio to John.  How she wished she had known that sooner.  Dimitrio is a much easier name to search for than generic apparently-one-size-really-does-fit-all-men-on-a-whaling-ship Juan.

DNA Testing

In order to answer the question, DNA testing was performed, ultimately on three groups of people.  What we wanted to know was whether these people were related and if so, how and how far back in time?

Group 1 – In Hawaii, known descendants of Juan Perez/John Paris, his great-granddaughter Yolanda and her brother, Benjamin Paris.

Group 2 – From Guam, Jillette and her father.

Group 3 – From Guam, Jose Perez.  Jose ultimately tested to be a second cousin of Jillette’s father, but that was unknown prior to DNA testing.

Two different kinds of DNA testing can be utilized to answer the question.  These two types of tests answer fundamentally different questions.

The Perez/Paris Y Tests

The Y DNA test tests only the Y chromosome, handed from father to son, unmixed with the DNA of the mother, so it stays mostly intact generation to generation, except for an occasional mutation.  The inheritance path of the Y chromosome is shown on the following chart in blue.

Perez yline

The Y-line gives us a great deal of information about the direct paternal line, but no information about any other line.  Comparing the Y-line results of 2 men tells us whether they descend from a common ancestor.

In order to determine whether or not the Paris family on Hawaii is genetically the same as the Perez family of Guam, Benjamin Paris, great-grandson of John Paris of Hawaii, and Jose Perez, descendant of the Perez family of Guam, tested.  Indeed, their Y chromosomes do match, with one mutation difference, which would be expected to occur over time.  Initially, only 12 markers were tested, which included the mutation difference, so the tests were expanded to 37 markers each to confirm the match.  The two men match perfectly on the rest of the markers, so at 37 markers, they still have one mutation difference.

Family Tree DNA provides a tool called TIP which estimates the time to a common ancestor between men whose DNA matches based on the mutation rates of different markers and the known generational distance between the men.  For example, we know that these families aren’t related in the past three generations, since Juan Perez came to Hawaii.

The TIP tool estimates that at the 50th percentile, these men are likely to be share a common ancestor between 4 and 5 generations ago.  So it’s very likely that either the father of Juan Perez who immigrated to Hawaii was their common ancestor, or his father.  One thing we know for sure, it was after the adoption of Spanish surnames on Guam.  Guam was colonized in the 17th century after the Spanish claimed it in 1565 and the first Catholic missionaries arrived in 1568 and began to baptize people with Spanish given and surnames.

Therefore, if Juan Perez was born in 1843, his father would have been born approximately 1813 and his father approximately 1783, allowing for the average 30 year generation.

This means that the common ancestor of these two families was probably 5 or 6 generations ago, and possibly more.

Autosomal Tests

The second type of test utilized was autosomal testing which tests all of the DNA passed from both parents to a child, not just the direct Y DNA of the paternal line.  The reason to use this type of test is that it shows you who your cousins are as measured by the amount of DNA that matches.

perez autosomal

DNA is passed to descendants in a predictable way, allowing us to mathematically calculate how closely related two people are – at least roughly.

Each parent gives half of their DNA to a child.  Different children don’t get the same “half” of the parents DNA, so each child inherits somewhat differently.  Therefore,  siblings share approximately half of their DNA.

perez cousins

You can see in the above chart that people receive 50% of their parents DNA, 25%, approximately of each grandparent’s DNA, and so forth up the tree.  By the time we reach the great-great grandparents level, you only inherited about 6.25% of your DNA from each grandparent.

In the case of 5th or 6th generation descent, as in our case, we’re looking at each descendant carrying about 3.12% of the DNA at the 5th generation, and 1.56% at the 6th generation.  Two individuals descended from these common ancestors would both carry an estimated 3.12%, but not necessarily the same 3.12%.  In fact, you only share .78% of common DNA with a third cousin and .195% with a 4th cousin.

I’ve said “on average” and this means that after the parents’ generation, the DNA of each preceding generation is not passed in exactly 50% packets.  In other words, you might not get exactly 25% of the DNA of each of your grandparents, but might receive 20%, 30%, 24% and 26%.

Autosomal testing is a powerful tool, but it’s less and less specific in terms of exactly how closely people are related, the further back in time relationships and common ancestors reach.

Because of this, it’s important to use the oldest generation available for testing.

We tested 4 individuals using the Family Finder autosomal test at Family Tree DNA; Jillette’s father, Jose Perez from Guam and both Yolanda and Benjamin Paris who are siblings from Hawaii.

The results were that Jillette’s father matched Jose Perez from Guam as a second cousin, suggesting that they share a common great-grandfather, and at the third cousin level with both Benjamin and Yolanda, suggesting that they share a common great-great-grandfather with Jillette’s Dad.

Match Name Relationship Range Suggested Relationship Shared cM Longest Block
Jose Perez 2-3rd   cousin 2nd   cousin 222.83 29.77
Yolanda   Paris 2-4th   cousin 3rd   cousin 56.58 22.55
Benjamin   Paris 2-4th   cousin 3rd   cousin 67.52 21.10

Family Tree DNA utilizes the 5cM (centiMorgan) threshold to indicate a match, where we can see to the 1cM threshold on the raw data.  I did this breakout for all parties, and indeed, they did show as related.

On the graph below, each of the three individuals is being compared to Jillette’s Dad.  Notice that in many cases, both Yolanda (blue) and Benjamin (orange), together, match Jillette’s Dad, which would be expected because they are siblings.  There are other cases through where either Yolanda or Benjamin match Jose (green) on the same segment where they both match Jillette’s Dad.  For example, on chromosome 2, you can see the blue stacked on top of the green.  We also see examples of orange and green as well, but no place to we have orange, blue and green together.  This illustrates how differently siblings (Yolanda and Benjamin) inherited DNA from their parents.

perez chromosomes

The Question that Remains

We’ve now proven that the Paris/Perez family is one and the same on Guam and Hawaii utilizing Y-line DNA and that these people are all related at some level.  Of course, in genealogy, answers generally produce more questions.

Jillette will have to utilize genealogy records in Guam to determine who the father of Jose (aka Dimitrio) Perez was, and indeed, she has made inroads in doing so.

The second question is just how is the Perez family related to Jillette’s family?  We know that her father is likely a second cousin to Jose Perez, meaning they share a common great-grandparent, but who?  Keep in mind that these are estimates based on the percentage and length of shared DNA, and the cousin estimate could also fall a generation or half-generation (once removed) in either direction.

Leen tree - Jillette

Jillette’s father’s 8 great-grandparents are as follows:

  • Vincente de Leon Guerrero Y Santos and Maria de Las Nieves Gregario
  • Unknown Fejerang and unknown Guzman
  • Francisco de la Torre and Maria Acosta
  • Fabian de la Cruz and Juliana Ada

You’ll notice, there’s not a Perez among them.  Now what?

This is both a genealogical and a genetic question, and can be approached in both ways simultaneously.  Obviously, were Jillette to discover that the next generation included a Perez, then the mystery would be solved.  However, using genetics can narrow the scope of this hunt.

Jillette needs to utilize known relationships to narrow the scope of which line descends from the Perez family.

The best way to do this is to test another relative of her grandparents, assuming both grandparents are deceased.  The best bet here is to test a sibling of a grandparent.  If you test a sibling of both grandparents autosomally, one of them should match Jose Perez.  That immediately eliminates half of Jillette’s Dad’s ancestors.  If a sibling of Jillette’s Dad’s grandparents isn’t available, then test their children.

Let’s say, by way of example, that we have now limited the search to Jillette’s Dad’s paternal line.  That consists of two grandparents, Rita Guzman Fejerang and Justo Gregario de Leon-Guerro.  The next step, genetically, is to test people who descend from the parents of Rita and Justo, but not the children of Rita and Justo.  So, Jillette needs to find siblings of Rita and Justo and test their siblings oldest descendants.  Again, one line should match Jose Perez.

Utilizing this technique, it’s possible to “walk up the tree,” so to speak.  In the meantime, this technique will help Jillette focus on where to concentrate her genealogical efforts.

ICW – In Common With

Another tool that Jillette can use is the ICW, or “in common with” tool at Family Tree DNA.  This tool is underutilized, as many people don’t realize what it can do.

If you mark a match as a known relative, you can then see matches you have in common with that person.  If you both match an individual, you should contact that individual to see if they have a piece of genealogical information that links to either or both of you.  In Jillette’s case, the mystery of how her family connects to the Perez family in Guam could well be held in the genealogy records of one of the ICW matches.

You can see that Jillette has confirmed the relationship for two matches below.

Perez match

To view your common matches, in the drop down box, select “in common with” and in the box directly below, you’ll see the people you’ve confirmed with a known relationship.  Select the person you want to see your common matches with, and click on the orange “filter” button.

perez in common with

The display you will see are the people who match both of you.  In this case, there are two common matches between Jillette’s father and Jose Perez that are not among the group tested above.  That’s exciting, because we know they are related to both men – the only question is how.  Jillette is working on these questions.

Follow the Story

So if you are a Perez, Paris or anything similar from Hawaii or Guam, please, contact Jillette through her website.  If you are a Leon-Guerrero, contact Jillette.  And if you want to see how this episode of Genetic Genealogy Reality TV turns out, you’ll have to follow Jillette’s blog on her webpage.  Perhaps the PBS special will be widely available or uploaded to YouTube and we’ll all be able to share in the final chapter of this exciting mystery!

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Disclosure

I receive a small contribution when you click on some of the links to vendors in my articles. This does NOT increase the price you pay but helps me to keep the lights on and this informational blog free for everyone. Please click on the links in the articles or to the vendors below if you are purchasing products or DNA testing.

Thank you so much.

DNA Purchases and Free Transfers

Genealogy Services

Genealogy Research

 

Triangulation for Autosomal DNA

In our last article, Triangulation for Y DNA, we covered triangulation for the Y chromosome, how it works, and how it can help a genetic genealogist.

In this article, we’re going to cover triangulation for autosomal DNA.

Triangulation for autosomal DNA is kind of a chicken and egg thing.  The goal is to associate and identify specific DNA segments to specific ancestors.  The easiest way to do this, or to begin the process, is with known relatives.  This gets you started identifying “family segments.”  From that point, you can use the known family segments, along with some common sense tools, to identify other people that are related through those common ancestors.  Through those matches with other people, you can continue to break down your DNA into more and more granular family lines.  This is easiest to visualize thinking about your 4 grandparents.

Triangulation is easiest if you have parents or grandparents living, and you can test them.  Yes, all of them.  Their DNA will give your immediate pointers when you have matches to which side of the family you share with your matches.  If you can test your 4 grandparents, you immediately know which of those 4 lines someone who matches you descends through, because they will also match one, and hopefully only one, of your 4 grandparents.  However, for some of us, testing even one parents is simply not possible, so first, let’s look at some examples of triangulation without your parents DNA results.

I’m fortunate that one of my cousins has given a lot of focus to our Vannoy line.  Vannoy was the surname of my great-grandmother, Elizabeth Vannoy (1846-1918) who married Lazarus Estes (1845-1919).  The Vannoy line has a mystery we’ve been trying to solve for decades now called, “Who Was Elijah Vannoy’s Father?”.  Elijah was Elizabeth’s grandfather.  Your family probably has a similar mystery, and these tools hold the potential to answer those questions.  They also have the potential to introduce more questions.  But then again, isn’t that the way of genealogy?  For every ancestor we find, we get two more questions.

Several of the Vannoy cousins are interested in solving this mystery as well, so they have taken the autosomal Family Finder test at Family Tree DNA.

We know how they are related, and the men have all been proven to be Vannoy via Y-line testing.  By doing this, we’ve assured no undocumented adoptions, also known as NPEs (NonParental Events) in the Vannoy line.

We expect our cousins to match, and indeed they do.  This is my test result showing my three cousins who match me.

In my family mystery, “Who Was Elijah Vannoy’s Father?”, there are 4 candidates, all brothers who lived in Wilkes County, NC in the late 1700s.  Elijah was born in 1786.  We have the wives surnames.  Hickerson is our primary candidate surname, so I wanted to see everyone who matches me on my match list who also shows the Hickerson surname.  I enter that surname in the “ancestral surname” box, and click on “run report.”  The matches returned will all carry the Hickerson surname, which you can see by scrolling for the highlighted names. Turns out, it was only my Vannoy cousins – today – but tomorrow might be different.

Vannoy match 1

Now for the triangulation tool.

I want to see if these three people share common DNA not just with me, but with each other.  If we all share a common segment of DNA, then that confirms a common ancestor and attributes the DNA at that address on that chromosome to that specific ancestral family.  This is the fundamental concept on which triangulation is based.

In my case, the known ancestral family is Vannoy, not Hickerson, at least not yet, so let’s look at the Vannoy cousins as compared to me.

vannoy match 2

Each of the participants results are color coded.  On the page below, you can see that each matching segment of the chromosomes is colored.  It turns out that all of us share a fairly large segment on Chromosome 15.  So now we can attribute that segment to Elijah Vannoy, our oldest proven ancestor in that line.  You can also see some areas where one or two of my cousins match my DNA, but not all of us.  Those can also be attributed to Elijah Vannoy’s line since we share no other (known) common ancestors.

vannoy match 3

This cousin match is simple because the men share the same surname, but if this was 3 women with different surnames, the matching would still work.  The challenge of course would be to find the common ancestor.  In this case, if all 3 women had Elijah Vannoy in their tree, we could still tell that this segment of Chromosome 15 was attributed to the Vannoy family because they all matched me and matched each other as well on the same DNA segment.

Eliminating False Matches

Now let’s move to the “what ifs.”  When my kids were young, I just hated sentences that started with “what if.”

What if I have a fourth match, Jane, with unknown ancestry who matches me on these segments, but does not match any of my cousins?

To determine this you would also have to look at your cousin’s matches or ask Jane if she also matches those cousins.  Remember that half of your DNA is that of your mother and the other half is that of your father.  You will have people that match you, and potentially on the same segments as your known relatives match you, but are not related to both you and your relatives.  This means they are matching you on the other half of your DNA.  In this case, if Jane didn’t match my Vannoy cousins too on that same segment of chromosome 15, then we would know that Jane’s match would be from my mother’s side.

To illustrate this point, let’s move to my results at 23andMe.

Let’s use Family Inheritance Advanced to see an example of two people who match me on the same segment, but are from opposite sides of my family.  My cousins Stacy and Cheryl are from Dad’s and Mom’s side of the family, respectively.  We know they don’t share common ancestry, but look, they both match me on four of the same segments.

cheryl stacy match

How is this possible, you ask.  Remember, I have two halves of each chromosome, one from Mom and one from Dad.  It just so happens that Cheryl and Stacy both match me on the same segment, but they are actually matching two different sides of my chromosome.  For this reason, these are called HIRs, or Half Identical Regions.

Now let’s prove this to the doubting Thomas’s out there.

cheryl stacy match 2

Here is the comparison of Cheryl and Stacy directly to each other.  They do have one small matching segment, 6 cM, so on the small side.  But they don’t match each other on any of the segments where I match both of them.

If they did match each other and me on the same locations, it would mean that we three have common ancestry.

The fact that they match each other on one segment could also mean they have distant common ancestry, which could be from one of our common lines or a line that I don’t share with them, or it could mean they have an identical by state (IBS) segment, meaning they come from a common population someplace hundreds to thousands of years ago.

The real message here is that you can never, ever, assume.  We all know about assume, and if you do, it will.  In this case, assuming would have been easy if you didn’t delve into the big picture, because both of these family lines contain Millers from Ohio living in close proximity in the 1800s.  However these Miller lines have been proven not to be the same lines (via Yline testing) and therefore, any assumptions would have been incorrect, despite the suggestive location and in-common names. Furthermore, cousin Stacy’s Miller line married into her line after our common ancestor, so is not blood related to me.  But conclusions are easy to jump to, especially for excited or inexperienced genetic genealogists.  It’s tempting even for those of us who are fairly seasoned now, but after you’ve been burned a few times, you do learn some modicum of restraint!

So, what’s next?

Color your Chromosomes

In my article, “The Autosomal Me – the Holy Grail – Identifying Native Genealogy Lines,” I described in detail the process of downloading your DNA information from either 23andMe or Family Tree DNA and then utilizing that information in a spreadsheet to look at matches – not 3 or 4 matches at a time, but chromosome by chromosome.

In my case, I was fortunate to have my mother’s DNA results at Family Tree DNA before she passed away, and I was equally as fortunate that they were still viable for the Family Finder test.  Believe me, I held my breath.

Because I have her results, I can tell immediately if my matches are from her side or from my father’s side.  If the person matches both Mom and me, then it’s from her side.  See how easy triangulation is.

Let’s take a look at Chromosome 15 with all of those Vannoy matches on my spreadsheet and see what kind of information we can glean.

vannoy table 1

On my master spreadsheet, my Mother’s matches have been copied in and are color coded, but since none of these people match Mother, I have eliminated that aspect here to avoid unnecessary confusion.

The people identified as “Dad” mean that I know they are genealogically related on my father’s side.  People who match Mother genetically are labeled Mom.  There aren’t any on this segment of chromosome 15, in our example above.  The blank cells in that column, by inference, match Dad’s DNA, since they don’t match Mom.  When I confirm genealogically how we’re related, I’ll enter “Dad” in that column, but not until then.

I’d like to comment on information gleaned from the spreadsheet.  Every DNA segment has a story to tell.

Cousin Estes

First, Cousin Estes, with yellow highlighting, is one of my closest Estes relatives.  He is a third cousin on the Estes side and also descends from Lazarus Estes and Elizabeth Vannoy.  He matches me on the segment from 26 (million) to 58 (million). My Vannoy group of matches, shaded green, extend from 33 to 58, so this tells me that the area from 26 to 33 where I match Cousin Estes, and not any Vannoys, is probably from an Estes ancestor, and not the Vannoy line.

Unfortunately, I don’t have any other matches on this segment, so I can’t figure out which line it comes from, just yet.

The green areas are common between me, cousin Estes and the Vannoy cousins.  If we could find a Hickerson match on these same segments, we could then solve the family mystery AND attribute part of this DNA to the Hickerson line.  But so far, no dice.  This is why it’s important to continue to look and to reach out to people you match, especially those who don’t enter their family surnames or post a GEDCOM file.  The answer may be waiting for you.

The Insanity Factor

The pink segment labeled Cousin Younger is making me insane, so let me share some insanity with you.

The Younger line descends through the Estes line, significantly upstream. The Y DNA of Marcus Younger, who had 1 son who had 1 son, does not match the expected Younger DNA line in Halifax County, Va.  Cousin Younger’s only solid Y match also doesn’t match his expected family line, so we’re fish out of water on the Y-line.  Two undocumented adoption cases that match each other, but no one else.  Great, just great.  These are the things genetic genealogy nightmares are made of.

Mary Younger, daughter of Marcus Younger, married George Estes who fought in the Revolutionary War.  Their son John R. Estes married Nancy Ann Moore in Halifax County and they settled in Claiborne County, TN about 1820 where the Vannoy family is found as well, having migrated from Wilkes Co., NC.  John Y. Estes, son of John R. Estes had son Lazarus Estes who married Elizabeth Vannoy.  Here’s the generational progression:

  1. Marcus Younger – wife unknown, Y DNA doesn’t match Younger line
  2. Mary Younger married George Estes, Halifax Co., VA
  3. John R. Estes married Nancy Ann Moore, moved to Claiborne Co, TN
  4. John Y. Estes married Rutha Dodson
  5. Lazarus Estes married Elizabeth Vannoy
  6. George Estes married Ollie Bolton
  7. My father, William Sterling Estes

And of course, there’s a monkey-wrench, so let’s throw it in.  Marcus Younger’s grandson, ancestor of Cousin Younger, married a Moore woman in Halifax County, VA.  We believe we know who her parents are, but we’re not positive.  If they are who we believe, Y-line DNA tests say the 2 Moore families, living within sight of each other, aren’t the same Moore line….but they interact closely and my Moore line doesn’t match any Moores upstream anyplace.  So, we have another unknown ingredient in the soup.

So, from me, Marcus Younger is 7 generations upstream.  I should carry about 1.5% of his DNA.  I was pleased to see that my Younger cousin and I matched.

However, and this is a BIG however, the Vannoy line should not be related to the Younger line.  We know that both of these cousins are matching on my father’s side, not just because of the genealogy, but because neither matches my mother.  But they are somehow related, as Cousin Younger is matching the Vannoy group big as life on chromosome 15.  Could this be an IBS (identical by state) segment?  Yes, it’s small – but I’m not comfortable relegating it to IBS because it’s genealogically “inconvenient,” at least not yet.

So, something may well be wrong, amiss or unknown in the genealogy, either in Tennessee, which is doubtful as we have that fairly solidly nailed down, especially in recent generations, or in Virginia where there is at least one known disconnect and possibly two taking into consideration the Moore monkeywrench.  Still, the Vannoy family was not living in the same state as the Younger family and came from New Jersey to North Carolina, not from Virginia.  Maybe the connection is in one of the unknown wives lines.

So, you can see my reason for being perplexed.  One thing is sure.  DNA doesn’t lie.  It’s up to us to figure out the message it is conveying and which ancestor it is from.

Powerful Tools

I hope you can see what a powerful tool we have at our disposal.  Of course, it can reveal who your ancestors are, along with some surprises.  I don’t mind the surprises.  I view them as gifts from the ancestors.  It’s those crazy-making half-surprises that bother me.  I swear, the ancestors have a sense of humor.

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Disclosure

I receive a small contribution when you click on some of the links to vendors in my articles. This does NOT increase the price you pay but helps me to keep the lights on and this informational blog free for everyone. Please click on the links in the articles or to the vendors below if you are purchasing products or DNA testing.

Thank you so much.

DNA Purchases and Free Transfers

Genealogy Services

Genealogy Research

The Autosomal Me Summary and Links

“The Autosomal Me” is a 9 part series published between February 6, 2013 and May 31, 2013.  They are a bit dated now, but the concepts are still rock solid.

Here are all of the links in one place.

Part 1 was “The Autosomal Me – Unraveling Minority Admixture” and Part 2 was “The Autosomal Me – The Ancestors Speak.”  Part 1 discussed the technique we are going to use to unravel minority ancestry, and why it works.  Part two gave an example of the power of fragmented chromosomal mapping and the beauty of the results.

Part 3, “The Autosomal Me – Who Am I?,” reviewed using our pedigree charts to gauge expected results and how autosomal results are put into population buckets.

Part 4, “The Autosomal Me – Testing Company Results,” shows what to expect from all of the major testing companies, past and present, along with Dr. Doug McDonald’s analysis.

In Part 5, “The Autosomal Me – Rooting Around in the Weeds Using Third Party Tools,” we looked at 5 different third party tools and what they can tell us about our minority admixture that is not reported by the major testing companies because the segments are too small and fragmented.

In Part 6, “The Autosomal Me – DNA Analysis – Splitting Up” we began the analysis part of the data we’ve been gathering.   We looked at how to determine whether minority admixture on specific chromosomes came from which parent.

Part 7, “The Autosomal Me – Start, Stop, Go – Identifying Native Chromosomal Segments” took a deeper dive and focused on the two chromosomes with proven Native heritage and began by comparing those chromosome segments using the 4 GedMatch admixture tools.

Part 8, “The Autosomal Me – Extracting Data Segments and Clustering,” we  extract all of the Native and Blended Asian segments in all 22 chromosomes, but only used chromosomes 1 and 2 for illustration purposes.  We then clustered the resulting data to look for trends, grouping clusters by either the Strong Native criteria or the Blended Asian criteria.

The final segment, Part 9, “The Autosomal Me – The Holy Grail – Identifying Native Genealogy Lines,” utilized all of the chromosomal information we’ve gathered in the earlier steps.  We apply that information to our matches and determine which of our lines are the most likely to have Native Ancestry.  This, of course, fulfills the goal of using DNA information to identify small amounts of minority admixture.

In summary, this series has been quite interesting and indeed, it did achieve the goals initially set forth.  However, it was very manually intensive and took far longer than anticipated, partly due to circumstances beyond my control, like software updates and vendor changes.  A second reason that it took longer than expected was due to the sheer amount of work involved in the various steps, particularly steps 8 and 9.  In addition, because Minority Admixture Mapping (MAP) is developmental, I had to try several different approaches to determine which one, or ones, worked best.  Despite the immense amount of work, I would describe this approach certainly as useful and successful.  In fact, I don’t know how else I would have ever eliminated some genealogical lines as candidates for Native heritage and focused on others without the combination of MAP’s new techniques combined with both old and new tools provided by others.

Having said that, I would suggest that this technique, because of the intensive manual effort required, is only for the very committed genetic genealogist – the warrior, so to speak.  It also will not work well with only a few matches.  I would suggest that you would need at least 200 or 300 matches, preferably more, which is typical of someone with colonial American heritage.  If that is you, and you are desperate to find your minority admixed lines….then this type of project may be for you.  Please thoroughly read all 9 articles before beginning.

Many of the techniques in the various steps can be utilized individually, without completing the entire MAP process.  For example, comparing vendor and third party results, using the GedMatch admixture tools and the chromosome comparisons for percentages of ethnicity all provide useful information in their own right, outside of the full MAP process.

Bon voyage on your journey of discovery to find “The Autosomal You”!  Your ancestors are the pot of gold at the end of that rainbow.

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Disclosure

I receive a small contribution when you click on some of the links to vendors in my articles. This does NOT increase the price you pay but helps me to keep the lights on and this informational blog free for everyone. Please click on the links in the articles or to the vendors below if you are purchasing products or DNA testing.

Thank you so much.

DNA Purchases and Free Transfers

Genealogy Services

Genealogy Research

The Autosomal Me – The Holy Grail – Identifying Native Genealogy Lines

holy grail

Sangreal – the Holy Grail.  We are finally here, Part 9 and the final article in our series.  The entire purpose of The Autosomal Me series has been to use our DNA and the clues it holds to identify minority admixture, in this case, Native American, and by identifying those Native segments, and building chromosomal clusters, to identify the family lines that contributed that Native admixture.  Articles 1-8 in the series set the stage, explained the process and walked us through the preparatory steps.  In this last article, we apply all of the ingredients, fasten the lid, shake and see what we come up with.  Let’s take a minute and look at the steps that got us to this point.

Part 1 was “The Autosomal Me – Unraveling Minority Admixture” and Part 2 was “The Autosomal Me – The Ancestors Speak.”  Part 1 discussed the technique we are going to use to unravel minority ancestry, and why it works.  Part two gave an example of the power of fragmented chromosomal mapping and the beauty of the results.

Part 3, “The Autosomal Me – Who Am I?,” reviewed using our pedigree charts to gauge expected results and how autosomal results are put into population buckets.

Part 4, “The Autosomal Me – Testing Company Results,” shows what to expect from all of the major testing companies, past and present, along with Dr. Doug McDonald’s analysis.

In Part 5, “The Autosomal Me – Rooting Around in the Weeds Using Third Party Tools,” we looked at 5 different third party tools and what they can tell us about our minority admixture that is not reported by the major testing companies because the segments are too small and fragmented.

In Part 6, “The Autosomal Me – DNA Analysis – Splitting Up” we began the analysis part of the data we’ve been gathering.   We looked at how to determine whether minority admixture on specific chromosomes came from which parent.

Part 7, “The Autosomal Me – Start, Stop, Go – Identifying Native Chromosomal Segments” took a deeper dive and focused on the two chromosomes with proven Native heritage and began by comparing those chromosome segments using the 4 GedMatch admixture tools.

Part 8, “The Autosomal Me – Extracting Data Segments and Clustering,” we  extract all of the Native and Blended Asian segments in all 22 chromosomes, but only used chromosomes 1 and 2 for illustration purposes.  We then clustered the resulting data to look for trends, grouping clusters by either the Strong Native criteria or the Blended Asian criteria.

In this final segment, Part 9, we will be applying the chromosomal information we’ve gathered to our matches and determine which of our lines are the most likely to have Native Ancestry.  This, of course, has been the goal all along.  So, drum roll…..here we go.

In Part 8, we ended by entering the start and stop locations of both Strong Native and Blended Asian clusters into a table to facilitate easy data entry into the chromosome match spreadsheet downloaded from either 23andMe or Family Tree DNA.  If you downloaded it previously, you might want to download it again if you haven’t modified it, or download new matches since you last downloaded the spreadsheet and add them to the master copy.

My goal is to determine which matches and clusters indicate Native ancestry, and how to correlate those matches to lineage.  In other words, which family lines in my family were Native or carry Native heritage someplace.

The good news is that my mother’s line has proven Native heritage, so we can use her line as proof of concept.  My father’s family has so many unidentified wives, marginalized families and family secrets that the Native line could be almost any of them, or all of them!  Let’s see how that tree shakes out.

Finding Matches

So let’s look at a quick example of how this would work.  Let’s say I have a match, John, on chromosome 4 in an area where my mother has no Native admixture, but I do.  Therefore, since John does not match my mother, then the match came from my father and if we can identify other people who also match both John and I in that same region on that chromosome, they too have Native ancestry.  Let’s say that we all also share a common ancestor.  It stands to reason at that point, that the common ancestor between us indicates the Native line, because we all match on the Native segment and have the same ancestor.  Obviously, this would help immensely in identifying Native families and at least giving pointers in which direction to look.  This is a “best case’ example.  Some situations, especially where both parents contribute Native heritage to the same chromosome, won’t be this straightforward.

Based on our findings, the maximum range and minimum (least common denominator or “In Common” range is as follows for the strongest Native segments on chromosomes 1 and 2.

  Chromosome 1 Chromosome 2
Largest   Range 162,500,000   – 180,000,000 79,000,000   – 105,000,000
Smallest   Range 165,658,091   – 171,000,000 90,000,000   – 103,145,425

At GedMatch

At GedMatch, I used a comparison tool to see who matched me on chromosome 1.  Only 2 people outside of immediate family members matched, and both from Family Tree DNA.  Both matched me on the critical Native segments between about 165-180mg.  I was excited.  I went to Family Tree DNA and checked to see if these two people also matched my mother, which would confirm the Native connection, but neither did, indicating of course that these two people matched me on my father’s side.  That too is valuable information, but it didn’t help identify any common Native heritage with my mother on chromosome 1.  It did, however, eliminate them as possibilities which is valuable information as well.

DNAGedcom

I used a new tool, DNAGedcom, compliments of Rob Warthen who has created a website, DNA Tools, at www.dnagedcom.com.  This wonderful tool allows you to download all of your autosomal matches at Family Tree DNA and 23andMe along with their chromosomal segment matches.  Since my mother’s DNA has only been tested at Family Tree DNA, I’m limiting the download to those results for now, because what I need is to find the people who match both she and I on the critical segments of chromosome 1 or 2.

Working with the Download Spreadsheet

It was disappointing to discover that my mother and I had no common matches that fell into this range on chromosome 1, but chromosome 2 was another matter.  Please note that I have redacted match surnames for privacy.

step 9 table 1

The spreadsheet above shows the comparison of my matches (pink) and Mother’s (white).  The Native segment of chromosome 2 where I match Mother is shaded mustard.  I shaded the chromosome segments that fell into the “common match” range in green.  Of those matches, there is only one person who matches both Mother and I, Emma.  The next step, of course, is to contact Emma and see if we can discover our common ancestor, because whoever it is, that is the Native line.  As you might imagine, I am chomping at the bit.

There are no segments of chromosome 2 that are unquestionably isolated to my father’s line.

Kicking it up a Notch

Are you wondering about now how something that started out looking so simple got so complex?  Well, I am too, you’re not alone.  But we’ve come this far, so let’s go that final leg in this journey.  My mom always used to say there was no point in doing something at all if you weren’t going to do it right.  Sigh….OK Mom.

The easiest way to facilitate a chromosome by chromosome comparison with all of your matches and your Strong Native and Blended Asian segments is to enter all of these segment groups into the match spreadsheet.  If you’re groaning and your eyes glaze over right after you do one big ole eye roll, I understand.

But let’s take a look at how this helps us.

On the excerpt from my spreadsheet below, for a segment of chromosome 5, I have labeled the people and how they match to me.  The ones labeled “Mom” in the last column are labeled that way because these people match both Mom and I.  The ones labeled “Dad” are labeled that way because I know that person is related on my father’s side.

Using the information from the tables created in Step 8, I entered the beginning and end of all matching segment clusters into my spreadsheet.  You can see these entries on lines 7, 8, 22, 23 and 24.  You then proceed to colorize your matches based on the entry for either Mom or Dad – in other words the blue row or the purple row, line 7, 22 or 24.  In this example, actually, line 5 Rex, based on the coloration, should have been half blue and half purple, but we’ll discuss his case in a minute.

The you can then sort either by match name or by chromosome to view data in both ways.  Let’s look at an example of how this works.

Legend:

  • White Rows:  Mother’s matches.  When Mother and I both match an individual, you’ll see the same matches for me in pink.  This double match indicates that the match is to Mother’s side and not Father’s side.
  • Pink Rows:  My matches.
  • Purple “Mom” labels in last column:  The individual matches both me and Mom.  This is a genetic match.
  • Teal “Dad” labels in last column: Genealogically proven to be from my father’s side.  This is a genealogical, not a genetic label, since I don’t have Dad’s DNA and can only infer these genetically when they don’t also match Mother.
  • Dark Pink Rows labeled “Me Amerind Only” are Strong Native or Blended Asian segments from Chromosome Table that I have entered.  My segments must come from one of my parents, so I’ve either colored them purple, if the match is someone who matches Mother and I both, or teal, if they don’t match both Mom and I, so by inference they come from my father’s line.
  • Dark Purple Rows labeled “Mom Amerind Only” are Mom’s segments from the Chromosome Table.
  • Dark Teal Rows labeled “Dad Amerind Only” are inferred segments belonging to my father based on the fact that Mother and I don’t share them.

Inferred Relationships

This is a good place to talk for just a minute about inferred relationships in this context.  Inference gets somewhat tenuous or weak.  The inferred matches on my father’s side began with the Native segments in the admix tools.  Some inferences are very strong, where Mother has no Native at all in that region.  For example, Mom has European and I have Native American.  No question, this had to come from my father.  But other cases are much less straightforward.

In many cases, categorization may be the issue.  Mom has West Asian for example and I have Siberian or Beringian.  Is this a categorization issue or is this a real genetic difference, meaning that my Siberian/Beringian is actually Native and came from my father’s side?

Other cases of confusion arise from segment misreads, etc.  I’ve actually intentionally included a situation like this below, so we can discuss it.  Like all things, some amount of common sense has to enter the picture, and known relationships will also weigh heavily in the equation.  How known family members match on other chromosome segments is important too.  Do you see a pattern or is this match a one-time occurrence?  Patterns are important.

Keep in mind that these entries only reflect STRONG Asian or Native signals, not all signals.  So even if Mother doesn’t have a strong signal, it doesn’t mean that she doesn’t have ANY signal in that region.  In some cases, start and stop segments for Mom and Dad overlapped due to very long segments on some matches.  In this case, we have to rely on the fact that we do have Mother’s actual DNA and assume that if they aren’t also a match to Mother, that what we are seeing is actually Dad’s lines, although this may not in actuality always be true.  Why?  Because we are dealing with segments below the matching threshold limit at both Family Tree DNA and 23andMe, and both of my parents carry Native heritage.  We can also have crossed a transitional boundary where the DNA that is being matched switches from Mom’s side to Dad’s side.

Ugh, you say, now that’s getting messy.  Yes, it is, and it has complicated this process immensely.

The Nitty-Gritty Data Itself

step 9 table 2

Taking a look at this portion of chromosome 5, we have lots going on in this cluster.  Most segments will just be boring pink and white (meaning no Native), but this segment is very busy.  Mom and I match on a small segment from 52,000,000 to 53,000,000.  Indeed, this is a very short segment when compared to the entire chromosome, but it is strongly Native.  We both also match Rex, our known cousin.  I’ve noted him with yellow in the table. Please note that Mom’s white matches are never shaded.  I am focused on determining where my own segments originate, so coloring Mother’s too was only confusing.  Yes, I did try it.

You can see that Mother actually shares all or any part of her segment with only me and Rex.  This simplifies matters, actually.  However, also note that I carry a larger segment in this region than does Mother, so either we have a categorization issue, a misread, or my father also contributed.  So, a conundrum.  This very probably implies that my father also carried Native DNA in this region.

Let’s see what Rex’s DNA looks like on this same segment of chromosome 5, from 52-53 using Eurogenes.  In the graph below, my chromosome is the top bar, Rex’s the middle and the bottom bar shows common DNA with the black nonmatching.  Yellow is Native American, red is South Asian, putty is Siberian, lime green is Mediterranean, teal is North Europe, orange is Caucus.

Step 9 item 3

This same comparison is shown to Mother’s DNA (top row) below.

step 9 item 4

It’s interesting that while Mother doesn’t have a lot of yellow (Native), she does have it throughout the same segment where Rex’s occurs, from about 52 through 53.5.

Does this actually point to a Native ancestor in the common line between Rex, Mom and I, which is the Swiss/German Johann Michael Miller line which does include an unidentified wife stateside, or does this simply indicate a common ancient population long ago in Asia?  It’s hard to say and is deserving of more research.  I feel that it is most likely Native because of the actual yellow, Native segment. If this was an Asian/European artifact, it would be much less likely to carry the actual yellow segment.

Is Rex also genealogically related to my father?  As I’ve worked through this process with all of my chromosomes and matches, I’ve really come to question if one of my father’s dead ends is also an ancestral line of my mother’s.

The key to making sense of these results is clusters.

Clusters vs Singleton Outliers

The work we’ve already done, especially in Step 8, clusters the actual DNA matching segments.  We’ve now entered that information into the spreadsheet and colored the segments of those who match.  What’s next?

The key is to look for people with clusters.  Many matches will have one segment, of say, 10 that match, colored.  Unless this is part of a large chromosome cluster, it’s probably simply an outlier.  Part of a large chromosome cluster would be like the large Strong Native segments on chromosome 1 or 2, for example.  How do we tell if this is a valid match or just an outlier?

Sort the spreadsheet by match name.  Take a look at all of the segments.

The example we’ll use is that of my cousin, Rex.  If you recall, he matches both me and Mother, is a known first cousin twice removed to me, (genetically equal to a second cousin), and is descended from the Miller line.

In this example, I also colored Mother’s segments because I wanted to see which segments that I did not receive from her were also Native. You can see that there are many segments where we all match and several of those are Native.  These also match to other Miller descendants as well, so are strongly indicative of a Native connection someplace in our common line.

If we were only to see one Native segment, we would simply disregard this as an outlier situation.  But that’s not the case.  We see a cluster of matches on various segments, we match other cousins from the same line on these segments, and reverting back to the original comparison admixture tools verifies these matches are Native for Rex, Mom and me.

step 9 item 5

Hmmmm…..what is Dad’s blue segment color doing in there?  Remember I said that we are only dealing with strong match segments?  Well, Mom didn’t have a strong segment at that location and so we inferred that Dad did.  But we know positively that this match does come from Mother’s side.  I also mentioned that I’ve come to wonder if my Mom and Dad share a common line.  It’s the Miller line that’s in question.  One of Johann Michael Miller’s children, Lodowick, moved from Pennsylvania to Augusta County, Virginia in the 1700s and his line became Appalachian, winding up in many of the same counties as my father’s family.  I’m going to treat this as simply an anomaly for now, but it actually could be, in this case, an small indication that these lines might be related.  It also might be a weak “Mom” match, or irrelevant.  I see other “double entries” like this in other Miller cousins as well.

What is the pink row on chromosome 12?  When I grouped the Strong Native and Asian Clusters, sometimes I had a strong grouping, and Mom had some.  The way I determined Dad’s inferred share was to subtract what Mom had in those segments from mine.  In a few cases, Mom didn’t have enough segments to be considered a cluster but she had enough to prevent Dad from being considered a cluster either, so those are simply pink, me with no segment coloring for Mom or Dad.

Let’s say I carry Strong Native/Mixed Asian at the following 8 locations:

10, 12, 14, 16, 18, 20, 22, 24

This meets the criteria for 8 of 15 ethno-geographic locations (in the admix tools) within a 2.5 cM distance of each other, so this cluster would be included in the Mixed Asian for me.  It could also be a Strong Native cluster if it was found in 3 of 4 individual tools.  Regardless of how, it has been included.

Let’s now say that Mom carries Native/Mixed Asian at 10, 12 and 14, but not elsewhere in this cluster.

Mom’s 3 does not qualify her for the 8/15 and it only leaves Dad with 5 inferred segments, which disqualifies him too.  So in this case, my cluster would be listed, but not attributable directly to either parent.

What this really says is that both of my parents carry some Native/Blended Asian on this segment and we have to use other tools to extrapolate anything further.  The logic steps are the same as for Dad’s blue segment.  We’re going to treat that as an outlier.  If I really need to know, I can go back to the actual admixture tools and see whether Mom or Dad really match me strongly on which segments and how we compare to Rex as well.  In this case, it’s obvious that this is a match to my Mother’s side, so I’m leaving well enough alone.

Let’s see what the matches reveal.

Matches

Referring back to the Nitty Gritty Data spreadsheet, Mom’s match to Phyllis on row 15 confirms an Acadian line.  This is the known line of Mother’s Native ancestry.  This makes sense and they match on Native segments on several other chromosomes as well.  In fact, many of my and Mother’s matches have Acadian ancestry.

My match to row 19, Joy, is a known cousin on my father’s side with common Campbell ancestry.  This line is short however, because our common ancestor, believed to be Charles Campbell died before 1825 in Hawkins County, TN.  He was probably born before 1750, given that his sons were born about 1770 and 1772.  Joy and I descend from those 2 sons.  Charles wife and parents are unknown, as is his wife.

My match to row 20, inferred through my father’s side, is to a Sizemore, a line with genetically proven Native ancestry.  Of course, this needs more research, but it may be a large hint.  I also match with several other people who carry Sizemore ancestors.  This line appears to have originated near the NC/VA border.

I wanted to mention rows 4 and 17.  Using our rules for the spreadsheet, if I match someone and they don’t also match Mother on this segment, I have inferred them to be through my father.  These are two instances that this is probably incorrect.  I do match these people through Mother, but Mother didn’t carry a strong signal on this segment, so it automatically became inferred to Dad.  Remember, I’m only recording the Strong Native or the Blended Asian segments, not all segments.  However, I left the inferred teal so that you can see what kinds of judgment calls you’ll have to make.  This also illustrates that while Mom’s genetic matches are solid, Dad’s inferred matches are less so and sometimes require interpretation.  The proper thing to do in this instance would be to refer back to the original admixture tools themselves for clarification.

Let’s see what that shows.

step 9 item 6

Using HarrappaWorld, the most pronounced segment is at about 52.  Teal is American.  You can see that Mother has only a very small trace between 53 and 54, almost negligible.  Mother’s admixture at location 52 is two segments of purple, brown and cinnamon which translate to Southwest Asian (lt purple), Mediterranean (dk purple), Caucasian (brown) and Balock (cinnamon), from Pakistan.

Checking Dodecad shows pretty much the same thing, except Mother’s background there is South Asian, which could be the same thing as Caucus and Pakistan, just different categorizations.

In this case, it looks like the admixture is not a categorization issue, but likely did come from my father.  Each segment will really be a case by case call, with only the strongest segments across all tools being the most reliable.

It’s times like this that we have to remember that we have two halves of each chromosome and they carry vastly different information from each of our parents.  Determining which is which is not always easy.  If in doubt, disregard that segment.

Raw Numbers

So, what, really did I figure out after all of this?

First, let’s look at some numbers.

I was working with a total of 292 people who had at least one chromosomal segment that matched me with a Strong Native or Blended Asian segment.  Of those, 59 also matched Mom’s DNA.  Of those, 18 had segments that matched only Mom.  This means that some of them had segments that also matched my father.  Keep in mind, again, that we are only using “strong matches” which involves inferring Dad’s segments and that referring back to the original tools can always clarify the situation.  There seems to be some specific areas that are hotspots for Native ancestry where it appears that both of my parents passed Native ancestry to me.

Many of my and my mother’s 59 matches have Acadian ancestry which is not surprising as the Acadians intermarried heavily with the Native population as well as within their own ethnic group.

Several also have Miller Ancestry.  My Miller ancestor is Johann Michael Miller (1692-1771) who immigrated in the colonial period and settled on the Pennsylvania frontier.  His son, Philip Jacob Miller’s (1726-1799) wife was a woman named Magdalena whose last name has been rumored for years to be Rochette, but no trace of a Rochette family has ever been found in the county where they lived, region or Brethren church history…and it’s not for lack of looking.  Several matches point to Native Ancestry in this line.  This also begs the question of whether this is really Native or whether it is really the Asian heritage of the German people.  Further analysis, referring back to the admixture tools, suggests that this is actually Native. It’s also interesting that absolutely none of Mother’s other German or Dutch lines show this type of ancestry.

There is no suggestion of Native ancestry in any of her other lines.  Mother’s results are relatively clean.  Dad’s are anything but.

Dad’s Messy Matches

My father’s side of the family, however, is another story.

I have 233 matches that don’t also match my mother.  There can be some technical issues related to no-calls and such, but by and large, those would not represent many.  So we need to accept that most of my matches are from my Father’s side originating in colonial America.  This line is much “messier” than my mother’s, genealogically speaking.

Of those 233 matches, only 25 can be definitely assigned to my father.  By definitely assigned, I mean the people are my cousins or there is an absolutely solid genealogical match, not a distant match.  Why am I not counting distant matches in this total?  We all know by virtue of the AncestryDNA saga that just because we match family lines and DNA does NOT mean that the DNA match is the genealogical line we think it is.  If you would like to read all about this, please refer to the details in CeCe Moore’s blog where she discussed this phenomenon.  The relevant discussion begins just after the third photo in this article where she shows that 3 of 10 matches at Ancestry where they “identify” the common DNA ancestor are incorrect.  Of course, they never SAY that the common ancestor is the DNA match, but it’s surely inferred by the DNA match and the “leaf” connecting these 2 people to a common ancestor.  It’s only evident to someone who has tested at least one parent and is savvy enough to realize that the individual whose ancestor on Mom’s side that they have highlighted, isn’t a match to Mom too.  Oops.  Mega-oops!!!

However, because we are dealing in our project, on Dad’s side, with inferences, we’re treading on some of the same ground.  Also, because we are dealing with only “strong clustered” segments, not all Native or Asian segments and because it appears that my parents both have Native ancestry.  To make matters worse, they may both have Algonquian, Iroquoian or both.

I have also discovered during this process that several of my matches are actually related to both of my parents.  I told you this got complex.

Of the people who don’t match Mother, 32 of them have chromosomal matches only to my father, so those would be considered reliable matches, as would the closest ones of the 25 that can be identified genealogically as matching Dad.  Many of these 25 are cousins I specifically asked to test, and those people’s results have been indispensable in this process.

In fact, it’s through my close circle of cousins that we have been able to eliminate several lines as having Native ancestry, because it doesn’t’ show as strong and they don’t have it either.

Many of these lines group together when looking at a specific chromosome.  There is line after line and cousin after cousin with highlighted data.

Dad’s Native Ancestors

So what has this told me?  This information strongly suggests that the following lines on my father’s side carry Native heritage.  Note the word “carry.”  All we can say at this point is that it’s in the soup – and we can utilize current matches at our testing company and at GedMatch, genealogy research and future matches to further narrow the branches of the tree.  Many of these families are intermarried and I have tried to group them by marriage group.  Obviously, eventually, their descendants all intermarried because they are all my ancestors on my father’s side.  But multiple matches to other people who carry the Native markers but aren’t related to my other lines are what define these as lines carrying Native heritage someplace.

  • Campbell – Hawkins County, Tn around 1800, missing wife and parents, married into the Dodson family
  • Dodson – Hawkins County, Tn, Virginia – written record of Lazarus Dodson camping with the Cherokee – missing wife, married into the Campbell and Estes family
  • Claxton/Clarkson – Russell Co., Va, Claiborne and Hancock Co., Tn – In NC associated with the known Native Hatcher family.  Possibly a son-in-law.  Missing family entirely.
  • Cook – Russell Co., Va. – daughter married Claxton/Clarkson – missing wives
  • Harrold, Harrell, Herrell – Hancock Co., Tn., Wilkes Co., NC – missing wives
  • McDowell – Hancock Co. Tn, Wilkes Co., NC, Augusta Co., Va – married into the Harrell family, missing wife
  • McNeil, McNiel – Wilkes Co., NC – missing wives, married into the Vannoy family
  • Vannoy – Wilkes County – some wives unaccounted for pre-1800
  • Crumley – Greene County, Tn., Lee Co., Va. – oral history of Native wife, married into the Vannoy family
  • Brown – Greene County, Tn, Montgomery Co., Va – married into the Crumley family, missing wives

While this looks like a long list, the list of families that don’t have any Native ancestry represented is much longer and effectively serves to eliminate all of those lines.  While I don’t have “THE” answer, I certainly know where to focus my research.  Maybe there isn’t the one answer.  Maybe there are multiple answers, in multiple lines.

The Take Away

Is this complex?  Yes!  Is it a lot of work?  You bet it is!  Is everything cast in concrete?  Never!  You can see that by the differences we’ve found in data interpretation, not to mention issues like no-calls (areas that for some reason in the test don’t read) and cross overs where your inheritance switches from your mom’s side to your dad’s side.  Is there any other way to do this?  No, not if your minority admixture is down in that weedy area around 1%.

Is it worth it?  You’ll have to decide.  It guess it depends on how desperately you want to know.

Part of the reason this is difficult is because we are missing tools in critical locations.  It’s an intensively laborious manual process.  In essence, using various tools, one has to figure out the locations of the Native and Asian chromosome segments and then use that information to infer Native matches by a double match (genetic match at DNA company plus match with Strong Native/Blended Asian segment) with the right parent.  It becomes even more complex if neither parent is available for testing, but it is doable although I would think the reliability could drop dramatically.

Tidbits and Trivia

I’ve picked up a number of little interesting tidbits during this process.  These may or may not be helpful to you.  Just kind of file them away until needed:)

  • Matches at testing companies come and go….and sometimes just go.  At Family Tree DNA, I have some matches that must be trembling on the threshold that come and go periodically.  Now you see them, now you don’t.  I lost matches moving from the Affy chip to the Illumina chip and lost additional matches between Build 36 and 37.  Some reappeared, some haven’t.
  • The start and stop boundaries changed for some matches between build 36 and build 37.  I did not go back and readjust, as most of these, in the larger scheme of things, were minor.  Just understand that you are looking for  patterns here that indicate Native heritage, not exact measurements.  This process is a tool, and unfortunately, not a magic wand:)
  • The centromere locations change between builds.  If you have matches near or crossing the middle of the chromosome, called the centromere, there may be breaks in that region.  I enter the centromere start and stop locations in my spreadsheet so that if I notice something odd going on in that region, the centromere addresses are right there to alert me that I’m dealing with that “odd” region.  You can find the centromere addresses in the FAQ at Family Tree DNA for their current build.
  • At 23andMe, when you reach the magic 1000 matches threshold, you start losing matches and the matching criteria is elevated so that you can stay under 1000 matches.  For people with colonial American or Jewish heritage, in other words those with high numbers of matches, this is a problem.
  • Watch for matches that are related to both sides of your family.  If your family lived in colonial America, you’re going to have a lot of matches and many are probably related to each other in ways you aren’t aware of.
  • If your parents are related to each other, this process might simply be too complex and intertwined to provide enough granular data to be useful.
  • Endogamous groups are impossible to sort through as to where, meaning which ancestor, the DNA came from.  This is because the original group founders’ DNA is just getting passed around and around, with little or no new DNA being introduced.  The effect of this on downstream generations relative to genetic genealogy is that matches appear to be more closely related than they are because of the amount of matching DNA they carry.  For my Brethren and my Acadian groups of people, I just list them by the group name, since, as the saying goes, “if you’re related to one Acadian, you’re related to all Acadians.”
  • If you’re going to follow this procedure, save one spreadsheet copy with the Strong Native only and then a second one with both the Strong Native and Blended Asian.  I’m undecided truthfully whether the Mixed Asian adds enough resolution for the extra work it generates.
  • When in question, refer back to the original tools.  The answer will always be found there.
  • Unfortunately, tools change.  You may want to take screen shots.  During this process, FTDNA went from build 36 to 37, match thresholds changed, 23andMe introduced a new user interface (which I find much less intuitive) and GedMatch has made significant changes.  The net-net of this is when you decide to undertake this project, commit to it and do it, start to finish.  Doing this little by little makes you vulnerable to changes that may make your data incompatible midstream – and you may not even realize it.
  • This entire process is intensively manual.  My spreadsheet is over 5500 rows long.  I won’t be doing it again…although I will update my spreadsheet with new matches from time to time.  The hard work is already done.
  • This same technique applies to any minority ancestry, not just Native, although that’s what I’ve been hunting for and one of the most common inquiries I receive.
  • I am hopeful that in the not too distant future many of these steps and processes will be automated by the group of bright developers that contribute to GedMatch or via other tools like DNAGedcom. HINT – HINT!!!

I would like to follow this same process to identify the source of my African heritage, but I’m thinking I’ll wait for the tools to become automated.  The great irony is that it’s very likely in the same lines as my Native ancestors.

If You Want to Test

What does it take to do this for yourself using the tools we have today, as discussed?

If your parents are living, the best gift you can give yourself is to test them, now, while you still can.  My mother has been gone for several years, but her DNA archived at Family Tree DNA was still viable.  This is not always the case.  I was fortunate.  Her DNA is one of the best gifts she gave me.  Not just by inheritance, but by having hers tested.  I thank her every single day, for both!  I could not have written this article without her DNA results.  The gift that keeps on giving.

If you don’t have a parent to test, you can test several other family members who will provide some information, but clearly won’t carry the same amounts of common DNA with you as your parents.  These would include your aunts and uncles, your parents’ siblings and what I’ve referred to as your close cousin circle.  Attempt to test at least someone from each line.  Yes, it gets expensive, but as one of my cousins said, as she took her third or 4th DNA test.  “It’s only money.  This is about family.”

You can also test your own siblings as well to obtain more information that you can use to match up to your family lines. Remember, you only receive half of your parents DNA, and your siblings will received some DNA from your parents that you didn’t.

I don’t have any other siblings to test, but I have tested cousins from several lines which have proven invaluable when trying to discern the sources of certain segments. For example, one of these Native segments fell on a common segment with my cousin Joy.  Therefore, I know it’s from the Campbell line, and because I have the Campbell paternal Y-DNA which is European, I know immediately the Native admixture would have had to be from a wife.

Much of this puzzle is deductive, but we now have the tools, albeit manual, to do this type of work that was previously impossible.  I am somewhat disappointed that I can’t pinpoint the exact family lines, yet, but hopefully as more people test and more matches provide genealogical information, this will improve.

If you want to play in this arena, you need to test at either Family Tree DNA, 23andMe, or both.  Right now, the most cost effective way to achieve this is to purchase a $99 kit from 23andMe, test there, then download your results from 23andMe and upload them to Family Tree DNA for $99.  That way, you are fishing in both pools.  Be aware that less than half of the people who test at either company download results to GedMatch, so your primary match locations are with the testing companies.  GedMatch is auxiliary, but critical for this analysis.  And the newest tool, DNAGedcom is a Godsend.

Also note that transferring your result to Family Tree DNA is NOT the same thing as actually testing there.  Why does this matter?  If you want a future test at Family Tree DNA, who is the premiere genetic genealogy testing company, offering the most variety and “deepest” commercial tests, they archive your DNA for 25 years, but if you transfer results, they don’t have your DNA to archive, so no future products can be ordered.  All I can say is thank Heavens Mom’s DNA was there.

Ancestry.com doesn’t provide any tools such as the chromosome browser or even the basic information of matching segments.  All you get is a little leaf that says you’re related, but the questions of which segment or how are not answerable today at Ancestry and as CeCe’s experience proved, its unreliable.  It’s  possible that you share the same surnames and ancestor, but your genetic connection is not through that family line.  Without tools, there is no way to tell.  Ancestry released raw data files a few weeks ago and very recently, GedMatch has implemented the ability to upload them so that Ancestry participants can now utilize the additional tools at GedMatch.

Although this has been an extraordinarily long and detailed process, I can’t tell you how happy I am to have developed this new technique to add to my toolbox.  My Native and African ancestors have been most elusive.  There are no records, they didn’t write and probably didn’t even speak English, certainly not initially.  The only clues to their existence, prior to DNA, were scant references and family lore.  The only prayer of actually identifying them is though these small segments of our DNA – yep – down in the weeds.  Are there false starts perhaps, and challenges and maybe a few snakes down there?  Yes, for sure, but so is the DNA of your ancestors.

Happy gardening and rooting around in the weeds.  Just think of it as searching for the very best buried treasure!  It’s down there, just waiting to be found.  Keep digging!

I hope you’ve enjoyed this series and that it leads you to your own personal genealogical treasure trove!

treasure chest

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Disclosure

I receive a small contribution when you click on some of the links to vendors in my articles. This does NOT increase the price you pay but helps me to keep the lights on and this informational blog free for everyone. Please click on the links in the articles or to the vendors below if you are purchasing products or DNA testing.

Thank you so much.

DNA Purchases and Free Transfers

Genealogy Services

Genealogy Research

Still Part Redman Deep Inside

Do you have a persistent story of Native American heritage in your family?

Standing Bear, Ponca, 1877Mark Green’s wife did.  Her ancestor Nancy Pittman’s mother was supposed to be a Cherokee Indian.  If your family was from the south, chances are you have some similar story.

Mark tracked her story both through DNA and the Cherokee records.  Her DNA showed 1% Native ancestry, but the records pertaining to the Guion-Miller Roll provided additional information.  It’s most interesting, because although the paperwork having to do with her 1907 application is ambiguous, with the application subsequently denied, the DNA, some 100 years and a few generations later, isn’t.

Here’s Mark’s article about the family story, his research and what he found.  Sometimes a little footwork goes a long way – and there are lots of records available having to do with the Cherokee and 5 Civilized Tribes who were removed to Oklahoma.

http://southerngreens.blogspot.com/2013/04/im-still-part-redman-deep-inside.html

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Disclosure

I receive a small contribution when you click on some of the links to vendors in my articles. This does NOT increase the price you pay but helps me to keep the lights on and this informational blog free for everyone. Please click on the links in the articles or to the vendors below if you are purchasing products or DNA testing.

Thank you so much.

DNA Purchases and Free Transfers

Genealogy Services

Genealogy Research